UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q9S9U6 (1A111_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 1-aminocyclopropane-1-carboxylate synthase 11; S-adenosyl-L-methionine methylthioadenosine-lyase 11; | |
Q43309 (1A14_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 1-aminocyclopropane-1-carboxylate synthase 4; S-adenosyl-L-methionine methylthioadenosine-lyase 4; | |
Q37001 (1A15_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 1-aminocyclopropane-1-carboxylate synthase 5; Ethylene-overproduction protein 2; S-adenosyl-L-methionine methylthioadenosine-lyase 5; | |
Q9STR4 (1A17_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 1-aminocyclopropane-1-carboxylate synthase 7; S-adenosyl-L-methionine methylthioadenosine-lyase 7; | |
Q9T065 (1A18_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 1-aminocyclopropane-1-carboxylate synthase 8; S-adenosyl-L-methionine methylthioadenosine-lyase 8; | |
Q9M2Y8 (1A19_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 1-aminocyclopropane-1-carboxylate synthase 9; Ethylene-overproduction protein 3; S-adenosyl-L-methionine methylthioadenosine-lyase 9; | |
Q9ZWB4 (3AT1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1; | |
Q9LR73 (3AT2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2; | |
Q9LJB4 (5MAT_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase; Anthocyanin 5-aromatic acyltransferase-like protein; Anthocyanin 5-glucoside malonyltransferase; | |
Q8GWR1 (AAAS_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Aladin; | |
Q39134 (AAP3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Amino acid permease 3; Amino acid transporter AAP3; | |
Q9FN04 (AAP4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Amino acid permease 4; Amino acid transporter AAP4; | |
Q9FF99 (AAP7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable amino acid permease 7; Amino acid transporter AAP7; | |
O80592 (AAP8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Amino acid permease 8; Amino acid transporter AAP8; | |
O82567 (AAPT1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Choline/ethanolaminephosphotransferase 1; Aminoalcohol phosphotransferase 1; | |
P46643 (AAT1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Aspartate aminotransferase, mitochondrial; Transaminase A; | |
P46644 (AAT3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Aspartate aminotransferase 3, chloroplastic; Protein YELLOW-LEAF-SPECIFIC GENE 4; Transaminase A; | |
P46248 (AAT5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Aspartate aminotransferase, chloroplastic; Transaminase A; | |
Q9LP11 (AATP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AAA-ATPase At1g43910; | |
F4J0B7 (AATP8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AAA-ATPase At3g28570, mitochondrial; | |
Q9LJJ5 (AATPB_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AAA-ATPase At3g28610; | |
Q147F9 (AATPC_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AAA-ATPase At3g50940; | |
Q9FN78 (AATPF_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AAA-ATPase At5g17730; | |
F4KFX5 (AATPJ_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AAA-ATPase At5g40000; | |
Q9M0D0 (AB3E_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ABC transporter E family member 3; MRP-related protein 4; Non-intrinsic ABC protein 15; RNase L inhibitor-like protein 3; | |
Q9LQK7 (AB7I_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein ABCI7, chloroplastic; ABC transporter I family member 7; Non-intrinsic ABC protein 6; Plastid SufD-like protein; | |
Q3E8H7 (AB9I_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Iron-sulfur cluster assembly SufBD family protein ABCI9; ABC transporter I family member 9; | |
Q9FH76 (ABAH3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Abscisic acid 8'-hydroxylase 3; Cytochrome P450 707A3; | |
Q9SJN0 (ABI5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein ABSCISIC ACID-INSENSITIVE 5; Dc3 promoter-binding factor 1; Protein GROWTH-INSENSITIVITY TO ABA 1; bZIP transcription factor 39; | |
O65902 (ACAP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cyclase-associated protein 1; Adenylyl cyclase-associated protein; | |
Q96329 (ACOX4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Acyl-coenzyme A oxidase 4, peroxisomal; G6p; Short-chain acyl-CoA oxidase; | |
Q9SJM1 (ACR10_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ACT domain-containing protein ACR10; Protein ACT DOMAIN REPEATS 10; | |
O49285 (ACR3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ACT domain-containing protein ACR3; Protein ACT DOMAIN REPEATS 3; | |
Q8LJW3 (ACR4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ACT domain-containing protein ACR4; Protein ACT DOMAIN REPEATS 4; | |
Q9ZPQ8 (ACR5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ACT domain-containing protein ACR5; Protein ACT DOMAIN REPEATS 5; | |
Q9SGA0 (ACR6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ACT domain-containing protein ACR6; Protein ACT DOMAIN REPEATS 6; | |
Q8LJW1 (ACR7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ACT domain-containing protein ACR7; Protein ACT DOMAIN REPEATS 7; | |
Q9LNA5 (ACR8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ACT domain-containing protein ACR8; Protein ACT DOMAIN REPEATS 8; | |
Q9SK86 (ADHL1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Alcohol dehydrogenase-like 1; | |
Q8LEB2 (ADHL6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Alcohol dehydrogenase-like 6; | |
O23147 (ADPG1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Polygalacturonase ADPG1; Pectinase ADPG1; Protein ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1; | |
Q8RY29 (ADPG2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Polygalacturonase ADPG2; Pectinase ADPG2; Protein ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2; | |
Q9LEW3 (AED1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Aspartyl protease AED1; Apoplastic EDS1-dependent protein 1; | |
O04496 (AED3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Aspartyl protease AED3; Apoplastic EDS1-dependent protein 3; | |
P51566 (AFC1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein kinase AFC1; | |
Q8RX86 (AGAL2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Alpha-galactosidase 2; Alpha-D-galactoside galactohydrolase 2; Melibiase; | |
Q8VXZ7 (AGAL3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Alpha-galactosidase 3; Alpha-D-galactoside galactohydrolase 3; Melibiase; | |
Q9FNP9 (AGCT_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Agmatine coumaroyltransferase; | |
Q9M354 (AGD6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable ADP-ribosylation factor GTPase-activating protein AGD6; Protein ARF-GAP DOMAIN 6; Protein ZIGA2; | |
O80925 (AGD7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ADP-ribosylation factor GTPase-activating protein AGD7; Protein ARF-GAP DOMAIN 7; Protein PDE1 SUPPRESSOR 1; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,240 | 37,334 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
30,410 | 5,314 | 346 | 697 | 28 | 271 | 58 | 33 | 8 | 20 | 4 | 68 | 19 | 4 | 1 | 26 | 2 | 1 | 1 | 12 | 1 | 1 | 6 | 3 |